Menu
biotium logo
Antibody Finder
Menu
Hero Image

Membrane Potential & Nerve Terminal Dyes

Biotium offers a wide selection of fast- and slow-responding fluorescent membrane potential dyes, and synaptic vesicle dyes for monitoring nerve terminal activity.

Membrane Potential Dyes

Fast-responding and slow-responding voltage-sensitive dyes.

SynaptoGreen™ & SynaptoRed™

Dyes for monitoring synaptic vesicle trafficking.

More Neuronal Probes

Fluorescent toxins, amyloid stains, antibodies, and more.

Membrane Potential Dyes

Slow-Response Membrane Potential Dyes

Translational (slow-response) voltage-sensitive dyes change membrane distribution in response to voltage shifts. DiBAC4(3) shows a slower response but increased fluorescence with depolarization, offering larger signal changes than faster dyes like ANEPPS. DiOC2(3), used in bacteria, shifts from green to red fluorescence as membrane potential rises, enabling ratiometric measurements. DiOC5(3) and DiOC6(3) are widely used carbocyanine dyes for membrane potential. TMRE and TMRM are rhodamine-based dyes suitable for quantitative assessment of membrane and mitochondrial membrane potential.

Fast-Response Membrane Potential Dyes

Fast-response membrane voltage-sensitive dyes are styryl dyes that undergo changes in fluorescence intensity in response to changes in membrane potential. These dyes undergo spectral shift with changes in membrane potential, allowing ratiometric measurements, and have been used to measure electrical activity in neural and cardiac cells.

Di-4-ANNEPS is used in stem cell-derived cardiomyocytes. Di-8-ANNEPS is more hydrophobic, photostable, and less phototoxic, making it better for long-term studies. Di-2-ANEPEQ is water-soluble and typically microinjected. Di-8-ANEPPQ and Di-12-ANEPPQ are more hydrophobic, used in retrograde neuronal labeling. RH237, RH414, RH421, and RH795 are fast potentiometric probes often used for functional imaging of neurons.

DiO/DPA Membrane Potential Kit

The membrane localization of dipicrylamine (DPA) is a function of the polarity and magnitude of membrane potential. The DiO/DPA system detects cytoplasmic membrane potential changes using the principle of fluorescence resonance energy transfer (FRET). The green fluorescent membrane dye DiO is a “stationary” FRET donor while DPA acts as a mobile FRET acceptor, resulting in a membrane potential-dependent quenching of fluorescence by FRET.

Absorption and emission spectra of DPA/DiO in methanol.

Slow-Responding Membrane Potential Dyes

ProductEx/EmCatalog number
DiBAC4(3)493/516 nm61011
DiOC2(3)482/497 nm70008
DiOC5(3)482/497 nm70007
DiOC6(3)484/501 nm70009
TMRE, 2 mM in DMSO549/574 nm70005
TMRE549/574 nm70016
TMRM548/573 nm70017

Fast-Responding Membrane Potential Dyes

ProductEx/EmCatalog number
Di-4-ANEPPS496/705 nm161010
Di-8-ANEPPS498/713 nm161012
Di-2-ANEPEQ (JPW 1114)See Note 261013
Di-8-ANEPPQ61014
Di-12-ANEPPQ61015
RH237528/782 nm61018
RH414532/706 nm61016
RH421515/704 nm61017
RH795530/712 nm61019
DiO/DPA Membrane Potential Kit484/501 nm30037
1Ex/Em is shown for dyes in methanol. In cell membranes, spectra of styryl dyes are typically blue-shifted by as much as 20 nm for absorption/excitation and 80 nm for emission.
2Spectrally similar to the ANEPPS dyes.

Nerve Terminal Dyes

SynaptoRed™ & SynaptoGreen™

SynaptoGreen™ and SynaptoRed™ (formerly FM® dyes) are fluorescent styryl dyes used to trace endocytic vesicles and monitor synaptic activity. They label synaptic vesicles in neurons and other cells in an activity-dependent manner. These dyes have hydrophilic, cationic head groups and lipophilic tails, becoming highly fluorescent in membranes but not in solution. Upon nerve stimulation, they are internalized into endocytic vesicles and released during exocytosis, causing a fluorescence decrease. The fluorescence on/off rates vary by dye. AM and HM variants are fixable, allowing for post-staining fixation and immunostaining. See the table below for dye properties.

General structure of SynaptoGreen™ and SynaptoRed™ dyes.
General structure of AM fixable nerve terminal dyes.

Background Reducers & Nerve Terminal Staining Kits

Nerve terminal dyes can cause background fluorescence from residual membrane staining. To reduce this, Biotium offers three clearing agents. ADVASEP-7 forms a washable complex with SynaptoGreen™ C4. SCAS reduces background immediately without washing. Sulforhodamine 101 quenches SynaptoGreen™ background via FRET. These are available individually or in kits with dyes and clearing agents.

Neurons in mouse dorsal root ganglia (DRG) labeled with AM1-43. Image courtesy of Dr. David Corey, Harvard Medical School. Also see See More

Properties of Nerve Terminal Dyes

Nerve Terminal Dyem*n*Fixable?SizeCatalog numberFeatures
SynaptGreen™ Dyes (Ex/Em ~480/660 nm in membranes)
SynaptoGreen™ C101No5 mg, 5 x 1 mg70042, 70043• Green nerve terminal probe
• Shortest tail for slowest on-rate & fastest off-rate
SynaptoGreen™ C2 (equivalent to FM®2-10)11No70044, 70045• Equivalent to FM®2-10
SynaptoGreen™ C321No70023, 70026• Green nerve terminal probe
SynaptoGreen™ C4 (equivalent to FM®1-43)31No70020, 70022• Equivalent to FM®1-43
SynaptoGreen™ C5 (equivalent to FM®1-84)41No70046, 70047• Equivalent to FM®1-84
SynaptoGreen™ C18 (equivalent to FM®3-25)171No70048, 70049• Equivalent to FM®3-25
AM1-4331Yes1 mg70024• Fixable version of SynaptoGreen C4
• Equivalent to FM®1-43FX
AM1-4441Yes70038• Improved fixability over AM1-43
AM2-1011Yes70036• Fixable analog of SynaptoGreen™ C2
AM3-25171Yes70051• Fixable far-red nerve terminal probe
HM1-4331Yes70053• Fixable red nerve terminal probe
SynaptoRed Dyes™ (Ex/Em ~510/750 nm in membranes)
SynaptoRed™ C103No5 mg, 5 x 1 mg70040, 70041• One carbon shorter than SynaptoRed™ C2
SynaptoRed™ C2 (equivalent to FM®4-64)13No70021, 70027• Equivalent to FM®4-64
SynaptoRed™ C2M** (equivalent to FM®5-95)13No70019, 70028• More water soluble than SynaptoRed™ C2
• Equivalent to FM®5-95
AM4-6413Yes1 mg70025• Fixable version of SynaptoRed™ C2
AM4-6533Yes70039• Fixable version of SynaptoRed™ C2
AM4-6643Yes70050• Fixable and spectrally identical to SynaptoRed™ C2
*m is the number of carbons in the lipophilic tail and n is the number of double bonds linking the two aromatic rings in the dye.
**The positively-charged end of SynaptoRed C2M is a trimethylammonium group.
FM is a registered trademark of Thermo Fisher Scientific.

Nerve Terminal Staining Kits

Nerve Terminal Staining KitNerve Terminal DyeBackground ReducerCatalog number
Nerve Terminal Staining Kit ISynaptoGreen™ C4 (5 x 1 mg )ADVASEP-7 (250 mg)70030
Nerve Terminal Staining Kit II (A)AM1-43 (1 mg)ADVASEP-7 (100 mg)70031
Nerve Terminal Staining Kit II (B)AM1-43 (1 mg)SCAS (100 mg)70031-1
Nerve Terminal Staining Kit IIISynaptoGreen™ C4 (5 x 1 mg)Sulforhodamine 101 (100 mg)70032
Nerve Terminal Staining Kit VSynaptoRed™ C2 (5 x 1 mg)ADVASEP-7 (250 mg)70034

FAQs

Most of our products are stable at room temperature for many days, so in all likelihood the product will still work just fine. To be on the safe side, we recommend performing a small scale positive control experiment to confirm that the product still works for your application before processing a large number of samples or precious samples.

One exception that we are aware of is GelGreen®, which is more sensitive to light exposure than most of our other fluorescent dyes. If GelGreen® is exposed to ambient light for a prolonged period of time (days to weeks), its color will change from dark orange to brick red. If this occurs, the GelGreen will no longer work for gel staining.

 

Bioscience kits
The guaranteed shelf life from date of receipt for bioscience kits is listed on the product information sheet. Some kits have an expiration date printed on the kit box label, this is the guaranteed shelf life date calculated from the day that the product shipped from our facility. Kits often are functional for significantly longer than the guaranteed shelf life. If you have an older kit in storage that you wish to use, we recommend performing a small scale positive control experiment to confirm that the kit still works for your application before processing a large number of samples or precious samples.

Antibodies and other conjugates
The guaranteed shelf life from date of receipt for antibodies and conjugates is listed on the product information sheet. Antibodies and other conjugates often are functional for significantly longer than the guaranteed shelf life. If you have an older conjugate in storage that you wish to use, we recommend performing a small scale positive control experiment to confirm that the product still works for your application before processing a large number of samples or precious samples.

For lyophilized antibodies, we recommend reconstituting the antibody with glycerol and antimicrobial preservative like sodium azide for the longest shelf life (note that sodium azide is not compatible with HRP-conjugates).

Chemicals, dyes, and gel stains
Biotium guarantees the stability of chemicals, dyes, and gel stains for at least a year from the date you receive the product. However, the majority of these products are highly stable for many years, as long as they are stored as recommended. Storage conditions can be found on the product information sheet or product safety and data sheet, material safety data sheet, and on the product label. Fluorescent compounds should be protected from light for long term storage.

If you have a Biotium compound that has been in storage for longer than one year that you wish to use, we recommend performing a small scale positive control experiment to confirm that the compound still works for your application before processing a large number of samples or precious samples.

Expiration date based on date of manufacture (DOM)
If your institution requires you to document expiration date based on date of manufacture for reagents, please contact techsupport@biotium.com for assistance.

Chemical products with special stability considerations:

Esters

Ester compounds include the following:

  • Succinimidyl esters (SE, also known as NHS esters), such as our amine-reactive dyes
  • Acetoxymethyl esters (AM esters), such as our membrane-permeable ion indicator dyes
  • Diacetate-modified dyes, like ViaFluor™ 405, CFDA, and CFDA-SE cell viability/cell proliferation dyes

Ester dyes are stable in solid form as long as they are protected from light and moisture. Esters are not stable in aqueous solution. Concentrated stock solutions should be prepared in anhydrous DMSO (see Biotium catalog no. 90082). Stock solutions in anhydrous DMSO can be stored desiccated at -20°C for one month or longer. Esters should be diluted in aqueous solution immediately before use. Succinimidyl esters (SE) should be dissolved in a solution that is free of amine-containing compounds like Tris, glycine, or protein, which will react with the SE functional group. AM esters and diacetate compounds should be dissolved in a solution that is free of serum, because serum could contain esterases that would hydrolyze the compound.

A note on CF® Dye succinimidyl ester stability

Succinimidyl esters (SE) are generally susceptible to hydrolysis, which can result in lower labeling efficiency. Many commercially available fluorescent dyes used for life science research are heavily sulfonated dyes which makes them particularly hygroscopic, worsening the hydrolysis problem. In addition, for several commercially available SE reactive dyes, the SE group is derived from an aromatic carboxylic acid, while the SE group in all of Biotium’s CF® Dyes is prepared from an aliphatic carboxylic acid. This structural difference reduces the susceptibility of CF® Dye SE reactive groups to hydrolysis, resulting in relatively stable reactive dyes with consistently higher labeling efficiency compared to other SE derivatives of other fluorescent dyes.

Maleimides, MTS and thiosulfate dyes
Like the succinimidyl ester dyes, these dyes are also susceptible to hydrolysis, although generally to a much lower degree. Thus, for long term storage, anhydrous DMSO is recommended for making stock solutions.

Other reactive dyes
Amines, aminooxy (also known as oxylamine), hydrazide, azide, alkyne, BCN, and tyramide reactive dyes, as well as dye free acids, are generally stable in aqueous solution when stored at -20°C for 6-12 months or longer, as long as no compounds are present that may react with the dye’s functional group. See the product information sheets for specific reactive dyes more information.

Coelenterazines and D-luciferin

Coelenterazines are stable in solid form when stored as recommended; they are not stable in aqueous solution. Concentrated coelenterazine stock solutions (typically 1-100 mg/mL) should be prepared in ethanol or methanol; do not use DMSO or DMF to dissolve coelenterazines, because these solvents will oxidize the compounds. Ethanol or methanol stocks of coelenterazine can be stored at -20°C or below for six months or longer; alcohol stocks may evaporate during storage, so use tightly sealing screw cap vials and wrap the vials with Parafilm for long term storage. Propylene glycol also can be used as a solvent to minimize evaporation. If the solvent evaporates, the coelenterazine will still be present in the vial, so note the volume in the vial prior to storage so that you can adjust the solvent volume to correct for evaporation if needed. Prepare working solutions in aqueous buffers immediately before use. Coelenterazines are stable for up to five hours in aqueous solution.

Aquaphile™ coelenterazines are water soluble formulations of coelenterazines. They are stable in solid form when stored as recommended. Aquaphile™ coelenterazines should be dissolved in aqueous solution immediately before use. They are stable for up to five hours in aqueous solution.

Note that coelenterazines are predominantly yellow solids, but may contain dark red or brown flecks. This does not affect product stability or performance. If your coelenterazine is uniformly brown, then it is oxidized and needs to be replaced.

D-luciferin is stable in solid form and as a concentrated stock solution when stored as recommended; it is not stable at dilute working concentrations in aqueous solution. Prepare concentrated D-luciferin stock solutions (typically 1-100 mg/mL) in water, and store in aliquots at -20°C or below for six months or longer. Prepare working solutions immediately before use.

Some of our products are packaged from a solution followed by solvent evaporation or lyophilization. If the chemical compound is very lightly colored or colorless and in small quantity, it may become thinly coated on the wall of the vial, making the vial appear empty. So, before you ask for a replacement, please inspect the vial carefully.

To dissolve lyophilized compounds, simply add the appropriate volume of the recommended solvent to the vial to make the desired concentration stock solution, and swirl or gently vortex to mix. Make sure the solvent comes in contact with the inside walls of the vial to fully recover the product.

Note that blue fluorescent dyes such as CFTM350, CFTM405M, and CFTM405S are colorless or very pale yellow, and may be difficult to see.

View more FAQs
Can't find your answer?
Talk to an Expert